The Programming Language of Life? (TMEB #1)

Nanorooms
Nov 10, 2022
4 notes
4 Notes in this Video

Gene Expression Control Elements

GeneExpression Promoters Operators TranscriptionalControl
00:48

François Jacob and Jacques Monod discovered the lac operon and regulatory elements earning the 1965 Nobel Prize. They introduced concepts of promoters, operators, repressors, and activators. Molecular biologists characterize regulatory elements across organisms. Synthetic biologists engineer promoter libraries with tunable expression strengths.

Negative Autoregulation in Gene Networks

NegativeAutoregulation GeneRegulation FeedbackControl ResponseSpeed
01:40

Michael Savageau analyzed negative autoregulation mathematically in the 1970s. Uri Alon characterized NAR as simplest network motif accelerating gene response. Systems biologists recognize NAR in approximately 40% of E. coli transcription factors. Synthetic biologists employ NAR improving genetic circuit performance.

Hill Functions in Gene Regulation

HillFunctions Cooperativity Ultrasensitivity MathematicalModeling
03:02

Archibald Hill developed the Hill equation in 1910 describing cooperative oxygen binding to hemoglobin. The mathematical form extends to modeling gene regulation, enzyme kinetics, and receptor binding. Systems biologists employ Hill functions approximating complex regulatory interactions. The formalism provides tractable models balancing biological realism with mathematical simplicity.

Response Time and Robustness in Gene Regulation

ResponseTime Robustness SystemsProperties RegulatoryDynamics
03:12

Uri Alon quantified how network motifs affect response time and robustness. Systems biologists analyze trade-offs between competing regulatory objectives—speed, precision, robustness. Evolutionary biologists study how selection optimizes regulatory performance. Engineers recognize similar trade-offs in control systems design.